chore(ipuaro): release v0.20.0

Added IndexProject and ExecuteTool use cases:
- IndexProject orchestrates full indexing pipeline
- ExecuteTool manages tool execution with confirmation
- Refactored CLI index and TUI /reindex commands
- Refactored HandleMessage to use ExecuteTool
- Added 19 unit tests for IndexProject
- All 1463 tests passing, 91.58% branch coverage

packages/ipuaro/CHANGELOG.md

@@ -5,6 +5,52 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.20.0] - 2025-12-01 - Missing Use Cases
+
+### Added
+
+- **IndexProject Use Case (0.20.1)**
+  - Full indexing pipeline orchestration in `src/application/use-cases/IndexProject.ts`
+  - Coordinates FileScanner, ASTParser, MetaAnalyzer, and IndexBuilder
+  - Progress reporting with phases: scanning, parsing, analyzing, indexing
+  - Stores file data, ASTs, metadata, symbol index, and dependency graph in Redis
+  - Returns indexing statistics: filesScanned, filesParsed, parseErrors, timeMs
+  - 19 unit tests
+
+- **ExecuteTool Use Case (0.20.2)**
+  - Tool execution orchestration in `src/application/use-cases/ExecuteTool.ts`
+  - Parameter validation and error handling
+  - Confirmation flow management with auto-apply support
+  - Undo stack management with entry creation
+  - Returns execution result with undo tracking
+  - Supports progress callbacks
+
+### Changed
+
+- **CLI index Command Refactored**
+  - Now uses IndexProject use case instead of direct infrastructure calls
+  - Simplified progress reporting and output formatting
+  - Better statistics display
+
+- **TUI /reindex Command Integrated**
+  - App.tsx reindex function now uses IndexProject use case
+  - Full project reindexation via slash command
+
+- **HandleMessage Refactored**
+  - Now uses ExecuteTool use case for tool execution
+  - Simplified executeToolCall method (from 35 lines to 24 lines)
+  - Better separation of concerns: tool execution delegated to ExecuteTool
+  - Undo entry tracking via undoEntryId
+
+### Technical Details
+
+- Total tests: 1463 passed (was 1444, +19 tests)
+- Coverage: 97.71% lines, 91.58% branches, 98.97% functions, 97.71% statements
+- All existing tests passing after refactoring
+- Clean architecture: use cases properly orchestrate infrastructure components
+
+---
+
 ## [0.19.0] - 2025-12-01 - XML Tool Format Refactor
 
 ### Changed

packages/ipuaro/package.json

@@ -1,6 +1,6 @@
 {
     "name": "@samiyev/ipuaro",
-    "version": "0.19.0",
+    "version": "0.20.0",
     "description": "Local AI agent for codebase operations with infinite context feeling",
     "author": "Fozilbek Samiyev <fozilbek.samiyev@gmail.com>",
     "license": "MIT",

packages/ipuaro/src/application/use-cases/ExecuteTool.ts

@@ -0,0 +1,201 @@
+import { randomUUID } from "node:crypto"
+import type { Session } from "../../domain/entities/Session.js"
+import type { ISessionStorage } from "../../domain/services/ISessionStorage.js"
+import type { IStorage } from "../../domain/services/IStorage.js"
+import type { DiffInfo, ToolContext } from "../../domain/services/ITool.js"
+import type { ToolCall } from "../../domain/value-objects/ToolCall.js"
+import { createErrorResult, type ToolResult } from "../../domain/value-objects/ToolResult.js"
+import { createUndoEntry } from "../../domain/value-objects/UndoEntry.js"
+import type { IToolRegistry } from "../interfaces/IToolRegistry.js"
+
+/**
+ * Confirmation handler callback type.
+ */
+export type ConfirmationHandler = (message: string, diff?: DiffInfo) => Promise<boolean>
+
+/**
+ * Progress handler callback type.
+ */
+export type ProgressHandler = (message: string) => void
+
+/**
+ * Options for ExecuteTool.
+ */
+export interface ExecuteToolOptions {
+    /** Auto-apply edits without confirmation */
+    autoApply?: boolean
+    /** Confirmation handler */
+    onConfirmation?: ConfirmationHandler
+    /** Progress handler */
+    onProgress?: ProgressHandler
+}
+
+/**
+ * Result of tool execution.
+ */
+export interface ExecuteToolResult {
+    result: ToolResult
+    undoEntryCreated: boolean
+    undoEntryId?: string
+}
+
+/**
+ * Use case for executing a single tool.
+ * Orchestrates tool execution with:
+ * - Parameter validation
+ * - Confirmation flow
+ * - Undo stack management
+ * - Storage updates
+ */
+export class ExecuteTool {
+    private readonly storage: IStorage
+    private readonly sessionStorage: ISessionStorage
+    private readonly tools: IToolRegistry
+    private readonly projectRoot: string
+    private lastUndoEntryId?: string
+
+    constructor(
+        storage: IStorage,
+        sessionStorage: ISessionStorage,
+        tools: IToolRegistry,
+        projectRoot: string,
+    ) {
+        this.storage = storage
+        this.sessionStorage = sessionStorage
+        this.tools = tools
+        this.projectRoot = projectRoot
+    }
+
+    /**
+     * Execute a tool call.
+     *
+     * @param toolCall - The tool call to execute
+     * @param session - Current session (for undo stack)
+     * @param options - Execution options
+     * @returns Execution result
+     */
+    async execute(
+        toolCall: ToolCall,
+        session: Session,
+        options: ExecuteToolOptions = {},
+    ): Promise<ExecuteToolResult> {
+        this.lastUndoEntryId = undefined
+        const startTime = Date.now()
+        const tool = this.tools.get(toolCall.name)
+
+        if (!tool) {
+            return {
+                result: createErrorResult(
+                    toolCall.id,
+                    `Unknown tool: ${toolCall.name}`,
+                    Date.now() - startTime,
+                ),
+                undoEntryCreated: false,
+            }
+        }
+
+        const validationError = tool.validateParams(toolCall.params)
+        if (validationError) {
+            return {
+                result: createErrorResult(toolCall.id, validationError, Date.now() - startTime),
+                undoEntryCreated: false,
+            }
+        }
+
+        const context = this.buildToolContext(toolCall, session, options)
+
+        try {
+            const result = await tool.execute(toolCall.params, context)
+
+            return {
+                result,
+                undoEntryCreated: this.lastUndoEntryId !== undefined,
+                undoEntryId: this.lastUndoEntryId,
+            }
+        } catch (error) {
+            const errorMessage = error instanceof Error ? error.message : String(error)
+            return {
+                result: createErrorResult(toolCall.id, errorMessage, Date.now() - startTime),
+                undoEntryCreated: false,
+            }
+        }
+    }
+
+    /**
+     * Build tool context for execution.
+     */
+    private buildToolContext(
+        toolCall: ToolCall,
+        session: Session,
+        options: ExecuteToolOptions,
+    ): ToolContext {
+        return {
+            projectRoot: this.projectRoot,
+            storage: this.storage,
+            requestConfirmation: async (msg: string, diff?: DiffInfo) => {
+                return this.handleConfirmation(msg, diff, toolCall, session, options)
+            },
+            onProgress: (msg: string) => {
+                options.onProgress?.(msg)
+            },
+        }
+    }
+
+    /**
+     * Handle confirmation for tool actions.
+     */
+    private async handleConfirmation(
+        msg: string,
+        diff: DiffInfo | undefined,
+        toolCall: ToolCall,
+        session: Session,
+        options: ExecuteToolOptions,
+    ): Promise<boolean> {
+        if (options.autoApply) {
+            if (diff) {
+                this.lastUndoEntryId = await this.createUndoEntry(diff, toolCall, session)
+            }
+            return true
+        }
+
+        if (options.onConfirmation) {
+            const confirmed = await options.onConfirmation(msg, diff)
+
+            if (confirmed && diff) {
+                this.lastUndoEntryId = await this.createUndoEntry(diff, toolCall, session)
+            }
+
+            return confirmed
+        }
+
+        if (diff) {
+            this.lastUndoEntryId = await this.createUndoEntry(diff, toolCall, session)
+        }
+        return true
+    }
+
+    /**
+     * Create undo entry from diff.
+     */
+    private async createUndoEntry(
+        diff: DiffInfo,
+        toolCall: ToolCall,
+        session: Session,
+    ): Promise<string> {
+        const entryId = randomUUID()
+        const entry = createUndoEntry(
+            entryId,
+            diff.filePath,
+            diff.oldLines,
+            diff.newLines,
+            `${toolCall.name}: ${diff.filePath}`,
+            toolCall.id,
+        )
+
+        session.addUndoEntry(entry)
+        await this.sessionStorage.pushUndoEntry(session.id, entry)
+        session.stats.editsApplied++
+
+        return entryId
+    }
+}

packages/ipuaro/src/application/use-cases/HandleMessage.ts

@@ -1,9 +1,8 @@
-import { randomUUID } from "node:crypto"
 import type { Session } from "../../domain/entities/Session.js"
 import type { ILLMClient } from "../../domain/services/ILLMClient.js"
 import type { ISessionStorage } from "../../domain/services/ISessionStorage.js"
 import type { IStorage } from "../../domain/services/IStorage.js"
-import type { DiffInfo, ToolContext } from "../../domain/services/ITool.js"
+import type { DiffInfo } from "../../domain/services/ITool.js"
 import {
     type ChatMessage,
     createAssistantMessage,
@@ -12,8 +11,8 @@ import {
     createUserMessage,
 } from "../../domain/value-objects/ChatMessage.js"
 import type { ToolCall } from "../../domain/value-objects/ToolCall.js"
-import { createErrorResult, type ToolResult } from "../../domain/value-objects/ToolResult.js"
-import { createUndoEntry, type UndoEntry } from "../../domain/value-objects/UndoEntry.js"
+import type { ToolResult } from "../../domain/value-objects/ToolResult.js"
+import type { UndoEntry } from "../../domain/value-objects/UndoEntry.js"
 import { type ErrorOption, IpuaroError } from "../../shared/errors/IpuaroError.js"
 import {
     buildInitialContext,
@@ -23,6 +22,7 @@ import {
 import { parseToolCalls } from "../../infrastructure/llm/ResponseParser.js"
 import type { IToolRegistry } from "../interfaces/IToolRegistry.js"
 import { ContextManager } from "./ContextManager.js"
+import { ExecuteTool } from "./ExecuteTool.js"
 
 /**
  * Status during message handling.
@@ -82,6 +82,7 @@ export class HandleMessage {
     private readonly llm: ILLMClient
     private readonly tools: IToolRegistry
     private readonly contextManager: ContextManager
+    private readonly executeTool: ExecuteTool
     private readonly projectRoot: string
     private projectStructure?: ProjectStructure
 
@@ -102,6 +103,7 @@ export class HandleMessage {
         this.tools = tools
         this.projectRoot = projectRoot
         this.contextManager = new ContextManager(llm.getContextWindowSize())
+        this.executeTool = new ExecuteTool(storage, sessionStorage, tools, projectRoot)
     }
 
     /**
@@ -257,87 +259,32 @@ export class HandleMessage {
     }
 
     private async executeToolCall(toolCall: ToolCall, session: Session): Promise<ToolResult> {
-        const startTime = Date.now()
-        const tool = this.tools.get(toolCall.name)
-
-        if (!tool) {
-            return createErrorResult(
-                toolCall.id,
-                `Unknown tool: ${toolCall.name}`,
-                Date.now() - startTime,
-            )
+        const { result, undoEntryCreated, undoEntryId } = await this.executeTool.execute(
+            toolCall,
+            session,
+            {
+                autoApply: this.options.autoApply,
+                onConfirmation: async (msg: string, diff?: DiffInfo) => {
+                    this.emitStatus("awaiting_confirmation")
+                    if (this.events.onConfirmation) {
+                        return this.events.onConfirmation(msg, diff)
                     }
-
-        const context: ToolContext = {
-            projectRoot: this.projectRoot,
-            storage: this.storage,
-            requestConfirmation: async (msg: string, diff?: DiffInfo) => {
-                return this.handleConfirmation(msg, diff, toolCall, session)
+                    return true
                 },
                 onProgress: (_msg: string) => {
                     this.events.onStatusChange?.("tool_call")
                 },
-        }
-
-        try {
-            const validationError = tool.validateParams(toolCall.params)
-            if (validationError) {
-                return createErrorResult(toolCall.id, validationError, Date.now() - startTime)
-            }
-
-            const result = await tool.execute(toolCall.params, context)
-            return result
-        } catch (error) {
-            const errorMessage = error instanceof Error ? error.message : String(error)
-            return createErrorResult(toolCall.id, errorMessage, Date.now() - startTime)
-        }
-    }
-
-    private async handleConfirmation(
-        msg: string,
-        diff: DiffInfo | undefined,
-        toolCall: ToolCall,
-        session: Session,
-    ): Promise<boolean> {
-        if (this.options.autoApply) {
-            if (diff) {
-                this.createUndoEntryFromDiff(diff, toolCall, session)
-            }
-            return true
-        }
-
-        this.emitStatus("awaiting_confirmation")
-
-        if (this.events.onConfirmation) {
-            const confirmed = await this.events.onConfirmation(msg, diff)
-
-            if (confirmed && diff) {
-                this.createUndoEntryFromDiff(diff, toolCall, session)
-            }
-
-            return confirmed
-        }
-
-        if (diff) {
-            this.createUndoEntryFromDiff(diff, toolCall, session)
-        }
-        return true
-    }
-
-    private createUndoEntryFromDiff(diff: DiffInfo, toolCall: ToolCall, session: Session): void {
-        const entry = createUndoEntry(
-            randomUUID(),
-            diff.filePath,
-            diff.oldLines,
-            diff.newLines,
-            `${toolCall.name}: ${diff.filePath}`,
-            toolCall.id,
+            },
         )
 
-        session.addUndoEntry(entry)
-        void this.sessionStorage.pushUndoEntry(session.id, entry)
-        session.stats.editsApplied++
-        this.events.onUndoEntry?.(entry)
+        if (undoEntryCreated && undoEntryId) {
+            const undoEntry = session.undoStack.find((entry) => entry.id === undoEntryId)
+            if (undoEntry) {
+                this.events.onUndoEntry?.(undoEntry)
+            }
+        }
+
+        return result
     }
 
     private async handleLLMError(error: unknown, session: Session): Promise<void> {

packages/ipuaro/src/application/use-cases/IndexProject.ts

@@ -0,0 +1,184 @@
+import * as path from "node:path"
+import type { IStorage } from "../../domain/services/IStorage.js"
+import type { IndexingStats, IndexProgress } from "../../domain/services/IIndexer.js"
+import { FileScanner } from "../../infrastructure/indexer/FileScanner.js"
+import { ASTParser } from "../../infrastructure/indexer/ASTParser.js"
+import { MetaAnalyzer } from "../../infrastructure/indexer/MetaAnalyzer.js"
+import { IndexBuilder } from "../../infrastructure/indexer/IndexBuilder.js"
+import { createFileData, type FileData } from "../../domain/value-objects/FileData.js"
+import type { FileAST } from "../../domain/value-objects/FileAST.js"
+import { md5 } from "../../shared/utils/hash.js"
+
+/**
+ * Options for indexing a project.
+ */
+export interface IndexProjectOptions {
+    /** Additional ignore patterns */
+    additionalIgnore?: string[]
+    /** Progress callback */
+    onProgress?: (progress: IndexProgress) => void
+}
+
+/**
+ * Use case for indexing a project.
+ * Orchestrates the full indexing pipeline:
+ * 1. Scan files
+ * 2. Parse AST
+ * 3. Analyze metadata
+ * 4. Build indexes
+ * 5. Store in Redis
+ */
+export class IndexProject {
+    private readonly storage: IStorage
+    private readonly scanner: FileScanner
+    private readonly parser: ASTParser
+    private readonly metaAnalyzer: MetaAnalyzer
+    private readonly indexBuilder: IndexBuilder
+
+    constructor(storage: IStorage, projectRoot: string) {
+        this.storage = storage
+        this.scanner = new FileScanner()
+        this.parser = new ASTParser()
+        this.metaAnalyzer = new MetaAnalyzer(projectRoot)
+        this.indexBuilder = new IndexBuilder(projectRoot)
+    }
+
+    /**
+     * Execute the indexing pipeline.
+     *
+     * @param projectRoot - Absolute path to project root
+     * @param options - Optional configuration
+     * @returns Indexing statistics
+     */
+    async execute(projectRoot: string, options: IndexProjectOptions = {}): Promise<IndexingStats> {
+        const startTime = Date.now()
+        const stats: IndexingStats = {
+            filesScanned: 0,
+            filesParsed: 0,
+            parseErrors: 0,
+            timeMs: 0,
+        }
+
+        const fileDataMap = new Map<string, FileData>()
+        const astMap = new Map<string, FileAST>()
+        const contentMap = new Map<string, string>()
+
+        // Phase 1: Scanning
+        this.reportProgress(options.onProgress, 0, 0, "", "scanning")
+
+        const scanResults = await this.scanner.scanAll(projectRoot)
+        stats.filesScanned = scanResults.length
+
+        // Phase 2: Parsing
+        let current = 0
+        const total = scanResults.length
+
+        for (const scanResult of scanResults) {
+            current++
+            const fullPath = path.join(projectRoot, scanResult.path)
+            this.reportProgress(options.onProgress, current, total, scanResult.path, "parsing")
+
+            const content = await FileScanner.readFileContent(fullPath)
+            if (!content) {
+                continue
+            }
+
+            contentMap.set(scanResult.path, content)
+
+            const lines = content.split("\n")
+            const hash = md5(content)
+
+            const fileData = createFileData(lines, hash, scanResult.size, scanResult.lastModified)
+            fileDataMap.set(scanResult.path, fileData)
+
+            const language = this.detectLanguage(scanResult.path)
+            if (!language) {
+                continue
+            }
+
+            const ast = this.parser.parse(content, language)
+            astMap.set(scanResult.path, ast)
+
+            stats.filesParsed++
+            if (ast.parseError) {
+                stats.parseErrors++
+            }
+        }
+
+        // Phase 3: Analyzing metadata
+        current = 0
+        for (const [filePath, ast] of astMap) {
+            current++
+            this.reportProgress(options.onProgress, current, astMap.size, filePath, "analyzing")
+
+            const content = contentMap.get(filePath)
+            if (!content) {
+                continue
+            }
+
+            const fullPath = path.join(projectRoot, filePath)
+            const meta = this.metaAnalyzer.analyze(fullPath, ast, content, astMap)
+
+            await this.storage.setMeta(filePath, meta)
+        }
+
+        // Phase 4: Building indexes
+        this.reportProgress(options.onProgress, 1, 1, "Building indexes", "indexing")
+
+        const symbolIndex = this.indexBuilder.buildSymbolIndex(astMap)
+        const depsGraph = this.indexBuilder.buildDepsGraph(astMap)
+
+        // Phase 5: Store everything
+        for (const [filePath, fileData] of fileDataMap) {
+            await this.storage.setFile(filePath, fileData)
+        }
+
+        for (const [filePath, ast] of astMap) {
+            await this.storage.setAST(filePath, ast)
+        }
+
+        await this.storage.setSymbolIndex(symbolIndex)
+        await this.storage.setDepsGraph(depsGraph)
+
+        // Store last indexed timestamp
+        await this.storage.setProjectConfig("last_indexed", Date.now())
+
+        stats.timeMs = Date.now() - startTime
+
+        return stats
+    }
+
+    /**
+     * Detect language from file extension.
+     */
+    private detectLanguage(filePath: string): "ts" | "tsx" | "js" | "jsx" | null {
+        const ext = path.extname(filePath).toLowerCase()
+        switch (ext) {
+            case ".ts":
+                return "ts"
+            case ".tsx":
+                return "tsx"
+            case ".js":
+                return "js"
+            case ".jsx":
+                return "jsx"
+            default:
+                return null
+        }
+    }
+
+    /**
+     * Report progress to callback if provided.
+     */
+    private reportProgress(
+        callback: ((progress: IndexProgress) => void) | undefined,
+        current: number,
+        total: number,
+        currentFile: string,
+        phase: IndexProgress["phase"],
+    ): void {
+        if (callback) {
+            callback({ current, total, currentFile, phase })
+        }
+    }
+}

packages/ipuaro/src/application/use-cases/index.ts

@@ -4,3 +4,5 @@ export * from "./StartSession.js"
 export * from "./HandleMessage.js"
 export * from "./UndoChange.js"
 export * from "./ContextManager.js"
+export * from "./IndexProject.js"
+export * from "./ExecuteTool.js"

packages/ipuaro/src/cli/commands/index-cmd.ts

@@ -3,23 +3,14 @@
  * Indexes project without starting TUI.
  */
 
-import * as fs from "node:fs/promises"
 import * as path from "node:path"
 import { RedisClient } from "../../infrastructure/storage/RedisClient.js"
 import { RedisStorage } from "../../infrastructure/storage/RedisStorage.js"
 import { generateProjectName } from "../../infrastructure/storage/schema.js"
-import { FileScanner } from "../../infrastructure/indexer/FileScanner.js"
-import { ASTParser } from "../../infrastructure/indexer/ASTParser.js"
-import { MetaAnalyzer } from "../../infrastructure/indexer/MetaAnalyzer.js"
-import { IndexBuilder } from "../../infrastructure/indexer/IndexBuilder.js"
-import { createFileData } from "../../domain/value-objects/FileData.js"
-import type { FileAST } from "../../domain/value-objects/FileAST.js"
+import { IndexProject } from "../../application/use-cases/IndexProject.js"
 import { type Config, DEFAULT_CONFIG } from "../../shared/constants/config.js"
-import { md5 } from "../../shared/utils/hash.js"
 import { checkRedis } from "./onboarding.js"
 
-type Language = "ts" | "tsx" | "js" | "jsx"
-
 /**
  * Result of index command.
  */
@@ -52,7 +43,6 @@ export async function executeIndex(
     const startTime = Date.now()
     const resolvedPath = path.resolve(projectPath)
     const projectName = generateProjectName(resolvedPath)
-    const errors: string[] = []
 
     console.warn(`📁 Indexing project: ${resolvedPath}`)
     console.warn(`   Project name: ${projectName}\n`)
@@ -76,142 +66,69 @@ export async function executeIndex(
         await redisClient.connect()
 
         const storage = new RedisStorage(redisClient, projectName)
-        const scanner = new FileScanner({
-            onProgress: (progress): void => {
-                onProgress?.("scanning", progress.current, progress.total, progress.currentFile)
+        const indexProject = new IndexProject(storage, resolvedPath)
+
+        let lastPhase: "scanning" | "parsing" | "analyzing" | "indexing" = "scanning"
+        let lastProgress = 0
+
+        const stats = await indexProject.execute(resolvedPath, {
+            onProgress: (progress) => {
+                if (progress.phase !== lastPhase) {
+                    if (lastPhase === "scanning") {
+                        console.warn(`   Found ${String(progress.total)} files\n`)
+                    } else if (lastProgress > 0) {
+                        console.warn("")
+                    }
+
+                    const phaseLabels = {
+                        scanning: "🔍 Scanning files...",
+                        parsing: "📝 Parsing files...",
+                        analyzing: "📊 Analyzing metadata...",
+                        indexing: "🏗️  Building indexes...",
+                    }
+                    console.warn(phaseLabels[progress.phase])
+                    lastPhase = progress.phase
+                }
+
+                if (progress.phase === "indexing") {
+                    onProgress?.("storing", progress.current, progress.total)
+                } else {
+                    onProgress?.(
+                        progress.phase,
+                        progress.current,
+                        progress.total,
+                        progress.currentFile,
+                    )
+                }
+
+                if (
+                    progress.current % 50 === 0 &&
+                    progress.phase !== "scanning" &&
+                    progress.phase !== "indexing"
+                ) {
+                    process.stdout.write(
+                        `\r   ${progress.phase === "parsing" ? "Parsed" : "Analyzed"} ${String(progress.current)}/${String(progress.total)} files...`,
+                    )
+                }
+                lastProgress = progress.current
             },
         })
-        const astParser = new ASTParser()
-        const metaAnalyzer = new MetaAnalyzer(resolvedPath)
-        const indexBuilder = new IndexBuilder(resolvedPath)
 
-        console.warn("🔍 Scanning files...")
-        const files = await scanner.scanAll(resolvedPath)
-        console.warn(`   Found ${String(files.length)} files\n`)
+        const symbolIndex = await storage.getSymbolIndex()
+        const durationSec = (stats.timeMs / 1000).toFixed(2)
 
-        if (files.length === 0) {
-            console.warn("⚠️  No files found to index.")
-            return {
-                success: true,
-                filesIndexed: 0,
-                filesSkipped: 0,
-                errors: [],
-                duration: Date.now() - startTime,
-            }
-        }
-
-        console.warn("📝 Parsing files...")
-        const allASTs = new Map<string, FileAST>()
-        const fileContents = new Map<string, string>()
-        let parsed = 0
-        let skipped = 0
-
-        for (const file of files) {
-            const fullPath = path.join(resolvedPath, file.path)
-            const language = getLanguage(file.path)
-
-            if (!language) {
-                skipped++
-                continue
-            }
-
-            try {
-                const content = await fs.readFile(fullPath, "utf-8")
-                const ast = astParser.parse(content, language)
-
-                if (ast.parseError) {
-                    errors.push(
-                        `Parse error in ${file.path}: ${ast.parseErrorMessage ?? "unknown"}`,
-                    )
-                    skipped++
-                    continue
-                }
-
-                allASTs.set(file.path, ast)
-                fileContents.set(file.path, content)
-                parsed++
-
-                onProgress?.("parsing", parsed + skipped, files.length, file.path)
-
-                if ((parsed + skipped) % 50 === 0) {
-                    process.stdout.write(
-                        `\r   Parsed ${String(parsed)} files (${String(skipped)} skipped)...`,
-                    )
-                }
-            } catch (error) {
-                const message = error instanceof Error ? error.message : String(error)
-                errors.push(`Error reading ${file.path}: ${message}`)
-                skipped++
-            }
-        }
-        console.warn(`\r   Parsed ${String(parsed)} files (${String(skipped)} skipped)     \n`)
-
-        console.warn("📊 Analyzing metadata...")
-        let analyzed = 0
-        for (const [filePath, ast] of allASTs) {
-            const content = fileContents.get(filePath) ?? ""
-            const meta = metaAnalyzer.analyze(
-                path.join(resolvedPath, filePath),
-                ast,
-                content,
-                allASTs,
-            )
-
-            const fileData = createFileData({
-                lines: content.split("\n"),
-                hash: md5(content),
-                size: content.length,
-                lastModified: Date.now(),
-            })
-
-            await storage.setFile(filePath, fileData)
-            await storage.setAST(filePath, ast)
-            await storage.setMeta(filePath, meta)
-
-            analyzed++
-            onProgress?.("analyzing", analyzed, allASTs.size, filePath)
-
-            if (analyzed % 50 === 0) {
-                process.stdout.write(
-                    `\r   Analyzed ${String(analyzed)}/${String(allASTs.size)} files...`,
-                )
-            }
-        }
-        console.warn(`\r   Analyzed ${String(analyzed)} files                    \n`)
-
-        console.warn("🏗️  Building indexes...")
-        onProgress?.("storing", 0, 2)
-        const symbolIndex = indexBuilder.buildSymbolIndex(allASTs)
-        const depsGraph = indexBuilder.buildDepsGraph(allASTs)
-
-        await storage.setSymbolIndex(symbolIndex)
-        await storage.setDepsGraph(depsGraph)
-        onProgress?.("storing", 2, 2)
-
-        const duration = Date.now() - startTime
-        const durationSec = (duration / 1000).toFixed(2)
-
-        console.warn(`✅ Indexing complete in ${durationSec}s`)
-        console.warn(`   Files indexed: ${String(parsed)}`)
-        console.warn(`   Files skipped: ${String(skipped)}`)
+        console.warn(`\n✅ Indexing complete in ${durationSec}s`)
+        console.warn(`   Files scanned: ${String(stats.filesScanned)}`)
+        console.warn(`   Files parsed: ${String(stats.filesParsed)}`)
+        console.warn(`   Parse errors: ${String(stats.parseErrors)}`)
         console.warn(`   Symbols: ${String(symbolIndex.size)}`)
 
-        if (errors.length > 0) {
-            console.warn(`\n⚠️  ${String(errors.length)} errors occurred:`)
-            for (const error of errors.slice(0, 5)) {
-                console.warn(`   - ${error}`)
-            }
-            if (errors.length > 5) {
-                console.warn(`   ... and ${String(errors.length - 5)} more`)
-            }
-        }
-
         return {
             success: true,
-            filesIndexed: parsed,
-            filesSkipped: skipped,
-            errors,
-            duration,
+            filesIndexed: stats.filesParsed,
+            filesSkipped: stats.filesScanned - stats.filesParsed,
+            errors: [],
+            duration: stats.timeMs,
         }
     } catch (error) {
         const message = error instanceof Error ? error.message : String(error)
@@ -229,22 +146,3 @@ export async function executeIndex(
         }
     }
 }
-
-/**
- * Get language from file extension.
- */
-function getLanguage(filePath: string): Language | null {
-    const ext = path.extname(filePath).toLowerCase()
-    switch (ext) {
-        case ".ts":
-            return "ts"
-        case ".tsx":
-            return "tsx"
-        case ".js":
-            return "js"
-        case ".jsx":
-            return "jsx"
-        default:
-            return null
-    }
-}

packages/ipuaro/src/tui/App.tsx

@@ -90,12 +90,10 @@ export function App({
         )
 
     const reindex = useCallback(async (): Promise<void> => {
-        /*
-         * TODO: Implement full reindex via IndexProject use case
-         * For now, this is a placeholder
-         */
-        await Promise.resolve()
-    }, [])
+        const { IndexProject } = await import("../application/use-cases/IndexProject.js")
+        const indexProject = new IndexProject(deps.storage, projectPath)
+        await indexProject.execute(projectPath)
+    }, [deps.storage, projectPath])
 
     const { executeCommand, isCommand } = useCommands(
         {

packages/ipuaro/tests/unit/application/use-cases/IndexProject.test.ts

@@ -0,0 +1,317 @@
+import { describe, it, expect, vi, beforeEach } from "vitest"
+import { IndexProject } from "../../../../src/application/use-cases/IndexProject.js"
+import type { IStorage, SymbolIndex, DepsGraph } from "../../../../src/domain/services/IStorage.js"
+import type { IndexProgress } from "../../../../src/domain/services/IIndexer.js"
+import { createFileData } from "../../../../src/domain/value-objects/FileData.js"
+import { createEmptyFileAST } from "../../../../src/domain/value-objects/FileAST.js"
+import { createFileMeta } from "../../../../src/domain/value-objects/FileMeta.js"
+
+vi.mock("../../../../src/infrastructure/indexer/FileScanner.js", () => ({
+    FileScanner: class {
+        async scanAll() {
+            return [
+                { path: "src/index.ts", type: "file", size: 100, lastModified: Date.now() },
+                { path: "src/utils.ts", type: "file", size: 200, lastModified: Date.now() },
+            ]
+        }
+        static async readFileContent(path: string) {
+            if (path.includes("index.ts")) {
+                return 'export function main() { return "hello" }'
+            }
+            if (path.includes("utils.ts")) {
+                return 'export const add = (a: number, b: number) => a + b'
+            }
+            return null
+        }
+    },
+}))
+
+vi.mock("../../../../src/infrastructure/indexer/ASTParser.js", () => ({
+    ASTParser: class {
+        parse() {
+            return {
+                ...createEmptyFileAST(),
+                functions: [{ name: "test", lineStart: 1, lineEnd: 5, params: [], isAsync: false, isExported: true }],
+            }
+        }
+    },
+}))
+
+vi.mock("../../../../src/infrastructure/indexer/MetaAnalyzer.js", () => ({
+    MetaAnalyzer: class {
+        constructor() {}
+        analyze() {
+            return createFileMeta()
+        }
+    },
+}))
+
+vi.mock("../../../../src/infrastructure/indexer/IndexBuilder.js", () => ({
+    IndexBuilder: class {
+        constructor() {}
+        buildSymbolIndex() {
+            return new Map([
+                ["test", [{ path: "src/index.ts", line: 1, type: "function" }]],
+            ]) as SymbolIndex
+        }
+        buildDepsGraph() {
+            return {
+                imports: new Map(),
+                importedBy: new Map(),
+            } as DepsGraph
+        }
+    },
+}))
+
+describe("IndexProject", () => {
+    let useCase: IndexProject
+    let mockStorage: IStorage
+
+    beforeEach(() => {
+        mockStorage = {
+            getFile: vi.fn().mockResolvedValue(null),
+            setFile: vi.fn().mockResolvedValue(undefined),
+            deleteFile: vi.fn().mockResolvedValue(undefined),
+            getAllFiles: vi.fn().mockResolvedValue(new Map()),
+            getFileCount: vi.fn().mockResolvedValue(0),
+            getAST: vi.fn().mockResolvedValue(null),
+            setAST: vi.fn().mockResolvedValue(undefined),
+            deleteAST: vi.fn().mockResolvedValue(undefined),
+            getAllASTs: vi.fn().mockResolvedValue(new Map()),
+            getMeta: vi.fn().mockResolvedValue(null),
+            setMeta: vi.fn().mockResolvedValue(undefined),
+            deleteMeta: vi.fn().mockResolvedValue(undefined),
+            getAllMetas: vi.fn().mockResolvedValue(new Map()),
+            getSymbolIndex: vi.fn().mockResolvedValue(new Map()),
+            setSymbolIndex: vi.fn().mockResolvedValue(undefined),
+            getDepsGraph: vi.fn().mockResolvedValue({ imports: new Map(), importedBy: new Map() }),
+            setDepsGraph: vi.fn().mockResolvedValue(undefined),
+            getProjectConfig: vi.fn().mockResolvedValue(null),
+            setProjectConfig: vi.fn().mockResolvedValue(undefined),
+            connect: vi.fn().mockResolvedValue(undefined),
+            disconnect: vi.fn().mockResolvedValue(undefined),
+            isConnected: vi.fn().mockReturnValue(true),
+            clear: vi.fn().mockResolvedValue(undefined),
+        }
+
+        useCase = new IndexProject(mockStorage, "/test/project")
+    })
+
+    describe("execute", () => {
+        it("should index project and return stats", async () => {
+            const stats = await useCase.execute("/test/project")
+
+            expect(stats.filesScanned).toBe(2)
+            expect(stats.filesParsed).toBe(2)
+            expect(stats.parseErrors).toBe(0)
+            expect(stats.timeMs).toBeGreaterThanOrEqual(0)
+        })
+
+        it("should store file data for all scanned files", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setFile).toHaveBeenCalledTimes(2)
+            expect(mockStorage.setFile).toHaveBeenCalledWith(
+                "src/index.ts",
+                expect.objectContaining({
+                    hash: expect.any(String),
+                    lines: expect.any(Array),
+                })
+            )
+        })
+
+        it("should store AST for all parsed files", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setAST).toHaveBeenCalledTimes(2)
+            expect(mockStorage.setAST).toHaveBeenCalledWith(
+                "src/index.ts",
+                expect.objectContaining({
+                    functions: expect.any(Array),
+                })
+            )
+        })
+
+        it("should store metadata for all files", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setMeta).toHaveBeenCalledTimes(2)
+            expect(mockStorage.setMeta).toHaveBeenCalledWith(
+                "src/index.ts",
+                expect.any(Object)
+            )
+        })
+
+        it("should build and store symbol index", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setSymbolIndex).toHaveBeenCalledTimes(1)
+            expect(mockStorage.setSymbolIndex).toHaveBeenCalledWith(
+                expect.any(Map)
+            )
+        })
+
+        it("should build and store dependency graph", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setDepsGraph).toHaveBeenCalledTimes(1)
+            expect(mockStorage.setDepsGraph).toHaveBeenCalledWith(
+                expect.objectContaining({
+                    imports: expect.any(Map),
+                    importedBy: expect.any(Map),
+                })
+            )
+        })
+
+        it("should store last indexed timestamp", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setProjectConfig).toHaveBeenCalledWith(
+                "last_indexed",
+                expect.any(Number)
+            )
+        })
+
+        it("should call progress callback during indexing", async () => {
+            const progressCallback = vi.fn()
+
+            await useCase.execute("/test/project", {
+                onProgress: progressCallback,
+            })
+
+            expect(progressCallback).toHaveBeenCalled()
+            expect(progressCallback).toHaveBeenCalledWith(
+                expect.objectContaining({
+                    current: expect.any(Number),
+                    total: expect.any(Number),
+                    currentFile: expect.any(String),
+                    phase: expect.stringMatching(/scanning|parsing|analyzing|indexing/),
+                })
+            )
+        })
+
+        it("should report scanning phase", async () => {
+            const progressCallback = vi.fn()
+
+            await useCase.execute("/test/project", {
+                onProgress: progressCallback,
+            })
+
+            const scanningCalls = progressCallback.mock.calls.filter(
+                (call) => call[0].phase === "scanning"
+            )
+            expect(scanningCalls.length).toBeGreaterThan(0)
+        })
+
+        it("should report parsing phase", async () => {
+            const progressCallback = vi.fn()
+
+            await useCase.execute("/test/project", {
+                onProgress: progressCallback,
+            })
+
+            const parsingCalls = progressCallback.mock.calls.filter(
+                (call) => call[0].phase === "parsing"
+            )
+            expect(parsingCalls.length).toBeGreaterThan(0)
+        })
+
+        it("should report analyzing phase", async () => {
+            const progressCallback = vi.fn()
+
+            await useCase.execute("/test/project", {
+                onProgress: progressCallback,
+            })
+
+            const analyzingCalls = progressCallback.mock.calls.filter(
+                (call) => call[0].phase === "analyzing"
+            )
+            expect(analyzingCalls.length).toBeGreaterThan(0)
+        })
+
+        it("should report indexing phase", async () => {
+            const progressCallback = vi.fn()
+
+            await useCase.execute("/test/project", {
+                onProgress: progressCallback,
+            })
+
+            const indexingCalls = progressCallback.mock.calls.filter(
+                (call) => call[0].phase === "indexing"
+            )
+            expect(indexingCalls.length).toBeGreaterThan(0)
+        })
+
+        it("should detect TypeScript files", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setAST).toHaveBeenCalledWith(
+                "src/index.ts",
+                expect.any(Object)
+            )
+        })
+
+        it("should handle files without parseable language", async () => {
+            vi.mocked(mockStorage.setFile).mockClear()
+
+            await useCase.execute("/test/project")
+
+            const stats = await useCase.execute("/test/project")
+            expect(stats.filesScanned).toBeGreaterThanOrEqual(0)
+        })
+
+        it("should calculate indexing duration", async () => {
+            const startTime = Date.now()
+            const stats = await useCase.execute("/test/project")
+            const endTime = Date.now()
+
+            expect(stats.timeMs).toBeGreaterThanOrEqual(0)
+            expect(stats.timeMs).toBeLessThanOrEqual(endTime - startTime + 10)
+        })
+    })
+
+    describe("language detection", () => {
+        it("should detect .ts files", async () => {
+            await useCase.execute("/test/project")
+
+            expect(mockStorage.setAST).toHaveBeenCalledWith(
+                expect.stringContaining(".ts"),
+                expect.any(Object)
+            )
+        })
+    })
+
+    describe("progress reporting", () => {
+        it("should not fail if progress callback is not provided", async () => {
+            await expect(useCase.execute("/test/project")).resolves.toBeDefined()
+        })
+
+        it("should include current file in progress updates", async () => {
+            const progressCallback = vi.fn()
+
+            await useCase.execute("/test/project", {
+                onProgress: progressCallback,
+            })
+
+            const callsWithFiles = progressCallback.mock.calls.filter(
+                (call) => call[0].currentFile && call[0].currentFile.length > 0
+            )
+            expect(callsWithFiles.length).toBeGreaterThan(0)
+        })
+
+        it("should report correct total count", async () => {
+            const progressCallback = vi.fn()
+
+            await useCase.execute("/test/project", {
+                onProgress: progressCallback,
+            })
+
+            const parsingCalls = progressCallback.mock.calls.filter(
+                (call) => call[0].phase === "parsing"
+            )
+            if (parsingCalls.length > 0) {
+                expect(parsingCalls[0][0].total).toBe(2)
+            }
+        })
+    })
+})